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Assess Assembly vs whole genome
Assess Assembly vs whole genome is a basic version of the Plantagora pro= jects tool for evaluating assemblies by comparing them to a reference genom= e.
Test data for this app appears directly in the Discovery Environment in = the Data window under Community Data -> iplantcollaborative -> ex= ample_data -> assess_= assembly.
Use arabtest2= and tair10genome.fas from t= he directory above as test input.
When the app is run in the Discovery Environment, use the following para= meters with the above input file(s) to get the output provided in the next = section below.
Expect text files named after = the input value for 'header' as output. For the test case, the output file = you will find in the example_data directory is named arabtest.report.