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Community rating: ?????
Quick Start
- The newer version 0.14.5 uses bowtie2 instead of bowtie, so you have to rebuild index if you have index generated by older version.
- To use Bismark Genome Preparation, import your data in Fasta format.
- Resources: http://www.bioinformatics.babraham.ac.uk/projects/bismark/
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> bismark (or Community Data -> iplantcollaborative -> example_data -> bismark.20151015 for older version 0.13.1) |
Input File(s)
Use tar and gzip compressed file, genome.tgz, or directory genome which contains reference genome sequences in Fasta from the directory above as test input.
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When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.Use these parameters within the DE app interface:
- Check "Compress the output into tgz file"
Output File(s)
Expect directory bismark_genome_preparation_output.tgz as output.
Tool Source for App
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