Fastq-screen-0.4.4 Community rating: ?????

Screens fastq files against specific databases for contaminants or alternate sequences.

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Use testdata.fq and the genomes directory from the directory above as test input. For running your own data, the bowtie2 index(es) must be contained in a directory named genomes, and the indexes must be named genome1, genome2, genome3 etc.

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