Items in PURPLE and links are the things you must modify. Change PURPLE items to BLACK when you save your page.

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Prodigal 

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This app is based on Prodigal tool for gene calling. It supports both the gene and meta genes.

Quick Start

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• To use Prodigal 2.5, import your data in ___ format.
• Resources: http://replace.with.URL.for.tool.documentation.from.the.tool.source.org

Test Data

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• prodigal

  Description and Quick Start

  Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee.

  Test Data

  /iplant/home/shared/imicrobe/kyclark

  Input File(s)

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• Use these parameters within the DE app interface:
  • parameter name - value/setting
  • parameter name - value/setting

Output File(s)

Expect a text file named after the input files as output. For the test case, the output file you will find in the example_data directory is named BeautifulProse.txt.

Tool Source for App

• http://replace.with.URL.for.tool.org

  FASTA

  Parameters Used in App

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When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Use either the "Default parameters..." section OR fill in the "Use these parameters..." section. Delete the unused section and the OR. Then, delete this note.

• Default parameters only, no further configuration needed.

OR

• None

  Output File(s)

  Gene predictions

• MORE INFO: http://prodigal.ornl.gov/
• HOW TO USE: https://www.protocols.io/view/Prodigal-Gene-Caller-faqbidw