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Cuffdiff performs differential transcript abundance analysis for two or more RNA-Seq samples. This updated version of the CuffDiff app does not include steps to run CummerBundapp includes some CummerRbund steps that are successful with some samples.
Quick Start
- To use Cuffdiff2, import your BAM files and your GTF file
- Resources: http://cufflinks.cbcb.umd.edu/, http://cufflinks.cbcb.umd.edu/tutorial.html and http://cufflinks.cbcb.umd.edu/howitworks.html#hdif
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