Items in PURPLE and links are the things you must modify. Change PURPLE items to BLACK when you save your page.
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Bowtie-Build
Community rating: ?????
Bowtie-Build creates the index files for the reference sequence(s) that will be used with bowtie.
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- To use Bowtie-Build, import your data in ___ fasta format.
- Resources: http://replacemcardle.with.URL.for.tool.documentation.from.the.tool.source.orgwisc.edu/mprime/help/bowtie/manual.html#what-is-bowtie
Test Data
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> directory bowtie. |
Input File(s)
Use TerriblyIncomprehensible.txt and HorriblyWritten.txt from E_coli.fa from the directory above as test input.
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When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.Use either the "Default parameters..." section OR fill in the "Use these parameters..." section. Delete the unused section and the OR. Then, delete this note.
- Default parameters only, no further configuration needed.
OR
- Use these parameters within the DE app interface:
- parameter name - value/setting
- parameter name - value/setting
Output File(s)
Expect a text file as output a series of files named after the input files as output. For the test case, the output file you will find in the example_data directory is named BeautifulProse.txt.for the prefix setting.
Tool Source for App
- http://replacemcardle.with.URL.for.tool.orgwisc.edu/mprime/help/bowtie/manual.html#what-is-bowtie