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Rationale:


Blastdbcmd-singlebatch-2.6.0 is used for extracting sequence data from a blast database. It dumps a select set of sequences from a BLAST database

Blastdbcmd-singlebatch-2.6.0 is invoked using the following:

...

Please work through the documentation and add your comments on the bottom of this page, or email comments to support@cyverse.org. Thank you.

Test Data

 The test data 

Info
All files are located in the Community Data directory of the iPlant Discovery Environment at the following path: Community Data > iplantcollaborative > example_data > makeblastdb (/iplant/home/shared/iplantcollaborative/example_data/makeblastdb/)

Run Create_BLAST_database-2.6.0__with_parse_seqids_option as following:

...

Code Block
>XP_019168153.1 PREDICTED: GDSL esterase/lipase 1-like [Ipomoea nil]
MSSLYSYMYALALLGSLANP
>XP_019168157.1 PREDICTED: myosin-12 isoform X2 [Ipomoea nil]
MGTPVNIIVG

 

Tool Source for App