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docs:_DE_archived_apps_blurb
docs:_DE_archived_apps_blurb

BEDTools windowBed

Community rating: ?????

Examines a "window" around each feature in A and reports all features in B that overlap the window. For each overlap the entire entry in A and B are reported.

Quick Start

Test Data

Info

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Bedtools.

Input File(s)

Use a.bed and b.bed from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect bedtools_window_output as output.

Tool Source for App

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