BEDTools subtractBed

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Removes the portion(s) of an interval that is overlapped by another feature(s).

Quick Start

• To use BEDTools subtractBed, import your data in BED format.
• Resources: http://code.google.com/p/bedtools/

Test Data

Input File(s)

Use a.bed and b.bed from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

• Default parameters only, no further configuration needed.

Output File(s)

Expect bedtools_subtract_output as output.

Tool Source for App

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