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BEDTools multiBamCov
Community rating: ?????
Counts sequence coverage for multiple bams at specific loci.
Quick Start
- To use BEDTools multiBamCov, import your data in BED format.
- Resources: http://code.google.com/p/bedtools/
Test Data
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Bedtools. |
Input File(s)
Use test_reads.sorted.bam, b.bed and test_reads.sorted.bam.bai from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect bedtools_multicov_output as output.
Tool Source for App
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