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BEDTools getOverlap
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Computes the amount of overlap (positive values) or distance (negative values) between genome features and reports the result at the end of the same line
Quick Start
- To use BEDTools getOverlap, import your data in BED format.
- Resources: http://code.google.com/p/bedtools/
Test Data
Info |
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Bedtools. |
Input File(s)
Use bedtools_window_output from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Use these parameters within the DE app interface:
- Specify the columns - 2,3,5,6
Output File(s)
Expect bedtools_overlap_output as output.
Tool Source for App
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