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docs:_DE_archived_apps_blurb
docs:_DE_archived_apps_blurb

BEDTools getOverlap

Community rating: ?????

Computes the amount of overlap (positive values) or distance (negative values) between genome features and reports the result at the end of the same line

Quick Start

Test Data

Info

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Bedtools.

Input File(s)

Use bedtools_window_output from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Use these parameters within the DE app interface:
    • Specify the columns - 2,3,5,6

Output File(s)

Expect bedtools_overlap_output as output.

Tool Source for App

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