Find SNPS
...
Samtools 1.7 mpileup
Quick Start
- To use Find SNPS - Samtools 1.7 mpileup, import your data in BAM format, sorted.
- Resources:http https://samtools.sourceforge.net/mpileup.shtmlgithub.com/samtools/samtools
Test Data
| Info |
|---|
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> find snps. |
...
- Default parameters only, with the Output.vcf name changed to s_3_tair10.vcf.
This is the same as running this command:
...
- .
...
Output File(s)
For the test case, the output file you will find in the example_data directory is named s_3_tair10.vcf.
Tool Source for App
- httphttps://sourceforgegithub.netcom/projectssamtools/samtools/?source=directory