Cuffdiff2
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Cuffdiff performs differential transcript abundance analysis for two or more RNA-Seq samples.
App Creator
Roger Barthelson
Quick Start
- To use Cuffdiff2, import your BAM files and your GTF file
- Resources: http://cufflinks.cbcb.umd.edu/, http://cufflinks.cbcb.umd.edu/tutorial.html and http://cufflinks.cbcb.umd.edu/howitworks.html#hdifcole-trapnell-lab.github.io/cufflinks/
Test Data
| Info |
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> cuffdiff |
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Expect a series of files describing the expression for genes and transcripts as output in a cuffdiff_out directory and a series of sorted files of significantly features that have significantly different expression in the sorted_data directory.