HTSeqQC - 1.0

This App runs HTSeqQC (version 1.0) to:

• HTSeqQC is an automated quality control analysis tool for a single and paired-end high-throughput sequencing data (HTS) generated from Illumina sequencing platforms.

Tool Creator

Renesh Bedre

Quick Start

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Input file(s) 2- Right files for paired-end data 

Parameters 

QUAL_FMT- Quality value format [1= Illumina 1.8, 2= Illumina 1.3,3= Sanger]. If quality format not provided, it will automatically detect based on sequence data

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MIN_LEN_FILT- Minimum length of the reads to retain after trimming

Output File(s)

HTSeqQC produces the filtered cleaned HTS data as FASTQ/FASTA files, and statistics and visualization of filtered cleaned HTS datasets. 

OUT_FMT- Output file format (fastq/fasta) [default:fastq]

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