GSNAP
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121212
Community rating: ?????
An HPC version of the GSNAP splice alignment application.
Quick Start
- To use GSNAP _lonestar 121212, import your data in fastq or fasta format, all files in a single directory.
- Resources: https://github.com/julian-gehring/GMAP-GSNAP
Test Data
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> gsnap. |
Input File(s)
Use the ecSeqs directory from the directory above as test input. Use the E coli genome (in the gsnap directory) as a reference.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
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Expect a .sam file for each of the input files as output. For the test case, the output files will each be named "inputfilename".sam.