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Forward_Regression-0.0.1
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Forward regression using partitioned linear model
Quick Start
- To use Forward_Regression-0.0.1, import your data in ___ format.
- Resources: Quantitaive Trait Locus Analysis Using a Partitioned Linear Model on a GPU Cluster
Test Data
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> forward_regression. |
Input File(s)
Use projectedSNP.0010.dat, residuals.chr10.sorted.bin, and fixed.effects.nam.sorted.filtered.bin from the directory above as input for genotype, phenotype and fixed effects.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect two text files as output. For the test case, the output file you will find in the example_data directory is named Pindices.dat and Pval.dat.
Tool Source for App
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