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Samtools 1.7 SAM to sorted BAM
Community rating: ?????
Create a position- sorted BAM file from a SAM alignment file
Samtools 1.7 SAM to sorted
BAMv2Community rating: ?????BAM
Create a position-sorted BAM file from a SAM alignment file
Quick Start
- To use SAM to sorted BAMv2BAM, import your data in SAM format.
- Resources: http://www.htslib.org/
Test Data
Input File(s)
Use BowtieOutput.sam from the directory listed above.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect a BAM file named after the input as output. For the test case, the output file you will find in the example_data directory is named sorted.bam.