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QTLC workflow

Community rating: ?????

Automatic workflow for QTL analysis using composite interval mapping

Quick Start

Test Data

Info

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> qtlc_workflow.

Input File(s)

Use qtlcart.map from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect various text files as output. For the test case, the output files you will find in the example_data directory are named c?t?.e(s/z6) for each chromosome, Eql.eqt, Preplot.plt, Prune.crb, qtlcart.log, qtlcart.rc, Rcross.cro, Rmap.map, Rqtl.qtl, SRmapqtl.sr and Zmapqtl.z..

Tool Source for App

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Include Page
docs:_DE_archived_apps_blurb
docs:_DE_archived_apps_blurb