QTLC Workflow2
Community rating: ?????
Composite interval mapping using stepwise regression output as cofactors.
Quick Start
- To use QTLC Workflow2, import your data in qtlcart format.
- Resources: http://statgen.ncsu.edu/qtlcart/
Test Data
| Info |
|---|
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> qtlc_workflow2. |
Input File(s)
Use qtlcart.cro and qtlcart.map from the directory above as test input for SRmapqtl_pipeline, Zmapqtl_pipeline, Eqtl_pipeline and Preplot_pipeline input data section.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect various text files as output. For the test case, the output files you will find in the example_data directory are named c?t?.e(s/z6) for each chromosome, Eql.eqt, Preplot.plt, qtlcart.log, qtlcart.rc, SRmapqtl.sr and Zmapqtl.z.
Tool Source for App
...
| Include Page | ||||
|---|---|---|---|---|
|