Convert SAM-to-sorted-BAM
Community rating: ?????
Create a position-sorted BAM file from a SAM alignment file
Quick Start
- To use Convert SAM-to-sorted-BAM, import your data in SAM format.
- Resources: http://samtools.sourceforge.net/samtools.shtml
Test Data
| Info |
|---|
Test data for this app appears at the link http://de.iplantcollaborative.org/dl/d/1AC7044C-C6F6-4707-9AE7-F213A2772035/bwa_output.sam |
Input File(s)
Use the file above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
...
Expect a BAM file as output. For the test case, the output file you will find at the link: http://de.iplantcollaborative.org/dl/d/83AA386F-46D9-4769-881A-1F93761EBCF3/output.bam