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Convert SAM-to-sorted-BAM

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Create a position-sorted BAM file from a SAM alignment file

Quick Start

Test Data


Test data for this app appears at the link

Input File(s)

Use the file above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.


Expect a BAM file as output. For the test case, the output file you will find at the link:

Tool Source for App