Filter homozygous SNPs

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Takes SNP list input from; SNP calling illumina seq data Part2 using VarScan. If genome mapping reference is non-divergent use mutant parent SNP list here to format for Mutant Identification 1 pipeline using awk

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• Default parameters only, no further configuration needed.

Output File(s)

Expect a text file named Final_mutant_specific_homozygotes.txt as output i.e. this will identify homozygous SNPs that are specific to the mutant parental line (SNPs from Workflow: SNP calling illumina seq data Part2).