Items in PURPLE and links are the things you must modify. Change PURPLE items to BLACK when you save your page.
Bowtie2Build-2.2.4 indexer
Community rating: ?????
Quick Start
- To use Bowtie2Build-2.2.4 indexer, import your data in ___ fasta format.
- Resources: http://replacebowtie-bio.with.URL.for.tool.documentation.from.the.tool.source.orgsourceforge.net/bowtie2/manual.shtml#the-bowtie2-build-indexer
Test Data
| Info |
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> directory. bowtie2-2.2.4-indexer |
Input File(s)
Use TerriblyIncomprehensible.txt and HorriblyWritten.txt from lambda_virus.fa from the directory above as test input.
...
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Use either the "Default parameters..." section OR fill in the "Use these parameters..." section. Delete the unused section and the OR. Then, delete this note.
- Default parameters only, no further configuration needed.
OR
- Use these parameters within the DE app interface:
- parameter name - value/setting
- parameter name - value/setting
lambda as the prefix name.
Output File(s)
Expect a text file named after the input files as named with lambda as the prefix as output. For the test case, the output file files you will find in the example_data directory is are named BeautifulProse.txtlambda.1.bt2 etc.
Tool Source for App
- httphttps://replace.with.URL.for.tool.orggithub.com/BenLangmead/bowtie