Items in PURPLE and links are the things you must modify. Change PURPLE items to BLACK when you save your page.
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fastqCombinePairedEnd
Community rating: ?????
Python Script ( Eric Normandeau Github:enormandeau) that re-synchronisespaired synchronises paired fastq files that have become out of synch due to manipulation (e.g. trimming, filtering)
Quick Start
- To use fastqCombinePariedEnd fastqCombinePairedEnd, import your data in ___ fastq format.
Resources:
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github.com/enormandeau/Scripts
Test Data
| Info |
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> directory. fastqCombinePairedEnd |
Input File(s)
Use TerriblyIncomprehensibleshortjump_1.txtfastq and HorriblyWritten.txt from shortjump_2.fastq from the directory above as test input.
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When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Use either the "Default parameters..." section OR fill in the "Use these parameters..." section. Delete the unused section and the OR. Then, delete this note.
- Default parameters only, no further configuration needed.
OR
- Use these parameters within the DE app interface:
- parameter name - value/setting
- parameter name - value/setting
Output File(s)
Expect a text file named after the input files as
- set spacer to "/"
Expect output files named after inputs as output. For the test case, the output file files you will find in the example_data directory is named BeautifulProse.txt.are named
shortjump_1.fastq_pairs_R1.fastq shortjump_2.fastq_pairs_R2.fastq shortjump_1.fastq_pairs_singles.fastq
Tool Source for App
- httphttps://replace.with.URL.for.tool.orggithub.com/enormandeau/Scripts