Items in PURPLE and links are the things you must modify. Change PURPLE items to BLACK when you save your page.
(SAMTOOLS-0.1.19
...
) Index BAM file
Community rating: ?????
Samtools application to index a BAM file.
Quick Start
- To use (SAMTOOLS-0.1.19 index ) Index BAM file, import your data in ___ formatBAM format.
- Resources:http https://replace.with.URL.for.tool.documentation.from.the.tool.source.orggithub.com/samtools/samtools
Test Data
| Info |
|---|
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> directoryIndex_BAM. |
Input File(s)
Use TerriblyIncomprehensible.txt and HorriblyWritten.txt from sorted.bam from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Use either the "Default parameters..." section OR fill in the "Use these parameters..." section. Delete the unused section and the OR. Then, delete this note.
- Default parameters only, no further configuration needed.
OR
- Use these parameters within the DE app interface:
- parameter name - value/setting
- parameter name - value/setting
No parameters to set.
Output File(s)
Expect a text file named after the input files as output. For bam file (e.g. *.bam, *.bam.bai) For the test case, the output file you will find in the example_data directory is named BeautifulProsesorted.txtbam.bai
Tool Source for App
- httphttps://replace.with.URL.for.tool.orggithub.com/samtools/samtools