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Rationale and background:
HISAT2: Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
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- left_reads- SRR946914_fastq_1.fastq,SRR946916_fastq_1.fastq
- right_reads-SRR946914_fastq_2.fastq, SRR946916_fastq_2.fastq
- reference-NC_010473.fa
Results
Successful execution of the HISAT2-index-align assessment pipeline will create a directory named out. The directory will contain bam and bai files for each sample. This can be used for further downstream analysis and visualization purpose:
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