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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> bwa_mem _> longreads

Input File(s)

Use 'SRR6364637_nano.fastq' as the left read file.


Check 'Nanopore data' under inputs.

Output File(s)

This app, run with the parameters above, will generate 1 output file: bwa_output.sam.

The analysis folder will also contain the BWA index files made during your analysis. 

Tool Source for App