Nanopolish-variants-0.10.2
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- Nanopolish 0.10.2 variants takes the following files as input:
- Oxford Nanopore reads in FASTA format
- Corresponding FAST5 files
- Indexed, sorted BAM file of those reads aligned to a reference genome
- Reference genome in FASTA format
- Resources: https://github.com/jts/nanopolish and https://media.readthedocs.org/pdf/nanopolish/latest/nanopolish.pdf
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Window: NC_016845.1:1-5333942
Ploidy: 1
Minimum candidate depth: 2
Leave all other parameters as default.
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