Nanopolish-index-0.8.1

This App runs Nanopolish (version 0.8.1) to 

• Extract FASTA or FASTQ files from FAST5 filesBuild an index mapping from basecalled reads to the signals measured by the sequencer.
• This app should be run if your data were basecalled with Albacore 2.0 or later. If your data were basecalled with Albacore 1.2 or earlier you should use Nanopolish_extract instead.

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Quick Start

• Nanopolish 0.8.1 takes a directory FAST5 files and basecalled reads in FASTA or FASTQ format as input. 

• Resources: https://github.com/jts/nanopolish and https://media.readthedocs.org/pdf/nanopolish/latest/nanopolish.pdf

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