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This App runs Nanopolish (version 0.8.1) to 

  • Extract FASTA or FASTQ files from FAST5 filesBuild an index mapping from basecalled reads to the signals measured by the sequencer.
  • This app should be run if your data were basecalled with Albacore 2.0 or later. If your data were basecalled with Albacore 1.2 or earlier you should use Nanopolish_extract instead.


Quick Start

  • Nanopolish 0.8.1 takes a directory FAST5 files and basecalled reads in FASTA or FASTQ format as input.