This App runs Nanopolish (version 0.8.1) to
- Extract FASTA or FASTQ files from FAST5 filesBuild an index mapping from basecalled reads to the signals measured by the sequencer.
- This app should be run if your data were basecalled with Albacore 2.0 or later. If your data were basecalled with Albacore 1.2 or earlier you should use Nanopolish_extract instead.
- Nanopolish 0.8.1 takes a directory FAST5 files and basecalled reads in FASTA or FASTQ format as input.
- Resources: https://github.com/jts/nanopolish and https://media.readthedocs.org/pdf/nanopolish/latest/nanopolish.pdf