RAxML Robinson-Foulds Distance 8.2.11
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raxml-RFdistance-8.2.11 requires a text file containing a concatenated list of trees to be compared. For additional information on this tool, please consult the RAxML manual.
Test Data
Use the nucleotide text file
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- Run the test analysis using the following parameters:
- substitution model: GTRCAT
- Output file base name: 49-10
Output File(s)
- Expect the following output files:
- .agave.log: log of activity by the Agave API that ran the app
- 49_10_trees.txt: the input alignmenttext file with concatenated trees
- RAxML_RF-Distances.49-10: the output of the program. Contains a list of all pairwise distances.
- RAxML_info.49-10: Information about the model and algorithm used and how the program was called.
- $longrandomstring.err: standard error
- $longrandomstring.out: standard output
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