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MUSCLE performs DNA or amino acid multiple sequence alignment.
MUSCLE stands for MUltiple Sequence Comparison by Log- Expectation. MUSCLE may achieve both better average accuracy and better speed than ClustalW2 or T-Coffee, depending on the chosen options.
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This documentation corresponds to the DE app named "Muscle-3.8.31", which runs on the UA HTCondor cluster. See MUSCLE-3.8.31 on Stampede for documentation of the app "MUSCLE-hpc-3.8.31", which runs on the Stampede supercomputer. These two apps run the same executable and can be used interchangeably. Wait may be shorter for Muscle-3.8.31. |
Quick Start
- To use MUSCLE, upload your data in FASTA format.
- Resources: documentation
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