Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

 

Include Page
docs:_DE_archived_apps_blurb
docs:_DE_archived_apps_blurb

 This Application has been archived. Please see the new RAxML 8.1.17 app.

...

App Name

RAxML implements a rapid maximum likelihood-based inference of large phylogenetic trees from nucleotide multiple sequence alignments.

Quick Start

  • To use RAxML, upload your data in relaxed PHYLIP format (sequential or interleaved, no name length restrictions).
  • Resources: documentation

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:

Community Data > iplantcollaborative > example_data > raxml_nucleotides

Input File(s)

Use campanulaceae.phy.reduced as test data.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only.
  • You must select a model. GTRCAT works.

Output File(s)

Expect as output:

Please note that due to the randomization of the algorithm, your outputs may not be EXACTLY the same as those listed in the example data directory.

Tool Source

...