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RNAFold

RNAFold predicts secondary RNA structure based on an input sequence. It finds the lowest energy secondary structure using three different energy minimization scores.

Quick Start

  • To use RNAFold, upload your sequence in a text file with no line feeds. The sequence should be a continuous lower-case string. 

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:

Community Data > iplantcollaborative > example_data > rnafold

Input File(s)

Use hcv_1021.rna
In this case this file has the .rna extension, however the tool is extension agnostic.

Parameters Used in App

Currently there are no parameters to be set in the Discover Environment

Output File(s)

There are 4 output files that are expected from a successful run. These are the following:

Tool Source for App

...

 

Include Page
docs:_DE_archived_apps_blurb
docs:_DE_archived_apps_blurb