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docs:_DE_archived_apps_blurb
docs:_DE_archived_apps_blurb

GFFRead: Convert GFF to GTF

Uses Cufflinks gffread to convert GFF to GTF. Loads of options.

Quick Start

Test Data

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Input File(s)

Use chloroplast_Arabidopsis_thaliana_(thale_cress)_dsgid7046.gff as input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect a GTF file 'gffread_filtered.gtf' as output. An example of this is in the above directory, called gffread.gtf

Tool Source for App

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