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GFFRead: Convert GFF to GTF
Uses Cufflinks gffread to convert GFF to GTF. Loads of options.
Quick Start
- To use GFFRead: Convert GFF to GTF, upload your data in GFF format.
- Resources: http://cufflinks.cbcb.umd.edu/gff.html
Test Data
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Input File(s)
Use chloroplast_Arabidopsis_thaliana_(thale_cress)_dsgid7046.gff as input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect a GTF file 'gffread_filtered.gtf' as output. An example of this is in the above directory, called gffread.gtf
Tool Source for App
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