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SSPACE is a script able to extend and scaffold pre-assembled contigs using one or more mate pairs or paired-end libraries, or even a combination.

Quick Start

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This analysis will generate the following output files/folders: 

  • bowtieoutput
  • dotfiles
  • intermediate_results
  • pairinfo
  • reads
  • test.final.

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  • evidence 
  • test.final.scaffolds.

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  • fasta 
  • test.logfile.

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  • txt 
  • test.summaryfile.txt

 

Tool Source for App