Graphmap index align 0.5.2

This App runs Graphmap (version 0.5.2):

A highly sensitive and accurate mapper for long, error-prone reads

App Creator

Amanda Cooksey

...

reference genome in fasta format (may be gzipped) or (an index (.gmidx) of the reference genome may be provided as well if one has already been generated)
long reads in fastq or fasta format (may be gzipped)

...

GCF_000146045.2_R64_genomic.fna.gmidx
- This is the index file of the genome generated by the app. This file may be used in future analyses in place of the reference genome fasta file.
output
- This is the alignment file generated by the app. Following the above parameters it will be named 'testout.sam'.