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gbsTagsToSNP_TASSEL 3.0.133


Community rating: ?????

Aligns tags from the same physical location against one another, calls SNPs from each alignment, and then outputs the SNP genotypes to a HapMap format file (one file per chromosome).


Test Data


Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> gbs_workflow -> directoryoutput.

Input File(s)

Use TerriblyIncomprehensible.txt and HorriblyWritten.txt from bwa_output.sam and myStudy.tbt.bin from the directory above as test input.


When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.Use either the "

  • Default parameters


  • Default parameters only, no further configuration needed.


  • Use these parameters within the DE app interface:
  • parameter name - value/setting
  • parameter name - value/setting

Output File(s)

Expect a folder of text file named after the input files as  as output. For the test case, the output file folder you will find in the example_data directory is named BeautifulProse.txt unfilt.

Tool Source for App