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gbsTagsToSNP_TASSEL 3.0.133
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Community rating: ?????
Aligns tags from the same physical location against one another, calls SNPs from each alignment, and then outputs the SNP genotypes to a HapMap format file (one file per chromosome).
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- To use gbsTagsToSNP_TASSEL 3.0.133, import your data in ___ formatSAM and TBT format.
- Resources: http://replace.with.URL.for.tool.documentation.from.the.tool.source.org Genotype-by-Sequencing
Test Data
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> gbs_workflow -> directoryoutput. |
Input File(s)
Use TerriblyIncomprehensible.txt and HorriblyWritten.txt from bwa_output.sam and myStudy.tbt.bin from the directory above as test input.
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When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.Use either the "
- Default parameters
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- Default parameters only, no further configuration needed.
OR
- Use these parameters within the DE app interface:
- parameter name - value/setting
- parameter name - value/setting
Output File(s)
Expect a folder of text file named after the input files as as output. For the test case, the output file folder you will find in the example_data directory is named BeautifulProse.txt unfilt.