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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> directory htseq_count. |
Input File(s)
Use TerriblyIncomprehensible.txt and HorriblyWritten.txt from testfile.sam and hy5_rep1_transcripts.gtf from the directory above as test input.
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When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Use either the "Default parameters..." section OR fill in the "Use these parameters..." section. Delete the unused section and the OR. Then, delete this note.
- Default parameters only, no further configuration needed.
OR
- Use these parameters within the DE app interface:
- parameter name - value/setting
- parameter name - value/settingMODE - union
- feature type - exon
- feature attribute - gene_id
- default for the rest
Output File(s)
Expect a text file named after the input files as a tab delimited file as output. For the test case, the output file you will find in the example_data directory is named BeautifulProsenamed FeatureCounts.txt.
Tool Source for App
- http://replacewww-huber.with.URL.for.tool.orgembl.de/users/anders/HTSeq/doc/index.html