The DE Quick Start tutorial provides an introduction to basic DE functionality and navigation.
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GMAP is a tool for rapidly and accurately mapping and aligning cDNA sequences to genomic sequences.
- Inputs:
- Genome name: Name of the genome
- kmer: Size of the kmer that you want to use
- Genome fasta file (mandatory): Path to the genome fasta file
- gmapdb directory: Destination directory name
Test Data
| Info |
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> gmap > test_inputs |
Input File(s)
Inputs:
- Genome name: test_genome
- kmer: 15
- Genome fasta file (mandatory): genome.fa
- gmapdb directory: gmapdb
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Expect a folder named gmapdb which you can use with gmap-2018.03.25 for mapping the reads against
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