khmer 3.0.0a1 filter-abund
filter to remove low abundance k-mers
Quick Start
- To use khmer 3.0.0a1 filter-abund, import your data in fastq format.
- Resources: http://khmer.readthedocs.io/en/v2.1.1/user/scripts.html#scripts-read-handling
Test Data
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Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> khmer |
Input File(s)
Use these file and test input:
...
Expect a fastq file named 'filter-abund_output.fq'
Tool Source for App