MAKER Genome Annotation using cc-tools and Jetstream (WQ-MAKER)
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Rationale and background:
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Copy the public SSH key from your id_rsa.pub file and paste it to the https://use.jetstream-cloud.org/application/settings, give a name to it and click confirm.
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cat ~/.ssh/id_rsa.pub |
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By default, WQ-MAKER runs 10 sequences from FASTA file as a single job on each WORKER instance, however you can specify the number of sequences created from FASTA file. So depending on the number of chromosomes/contigs/scaffolds and your allocation AU's, launch the number of workers accordingly. The maximum number of WORKERS can be same as the number of sequences of FASTA file. For the current tutorial we will launch 4 worker instances (the FASTA file contain 12 sequences and so we can launch 12 WORKERS and finish the job early) |
Step 7. As the instance is launched behind the scenes, you will get an update as it goes through each step.
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