Normalize By Median
Normalize By Median
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Filters a fastq/fasta file using digital normalization via median k-mer abundances.
Quick Start
- To use Normalize By Median, import your data in fastq format.
- Resources: https://github.com/dib-lab/khmer/blob/master/scripts/normalize-by-median.py and http://khmer-protocols.readthedocs.io/en/v0.8.2/index.html#
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data > Soapdenovo2-input
Input File(s)
Use fastq files from the directory above as test input.