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Blastn-2.2.26
Blastn-2.6.0+
BLASTp UniProt
Blastp-2.2.29
Blastp-2.6.0+
BLASTX (HPC)
blat 36 (with options)
Blat (default)
BLAT_psl_to_SAM
Blat_with_BAM_output
Bowtie2-2.2.4 Bowtie2-Build indexer and aligner (HPC)
Bowtie2Build-2.2.4 indexer
Bowtie 1.2.2 build and map
Bowtie-2.2.1--Build-and-Map
Bowtie-Build
btrim
BuildICM-1.0.0-Dev
Bulk Blast 2 Sequences
BUSCO in the Discovery Environment
BUSCO-v2.0 in the Discovery Environment
BUSCO-v3.0 in the Discovery Environment
BWA 0.7.4 Divergent species
BWA 0.7.12 indexer aligner and mem (HPC)
BWA Aligner for Paired-End Illumina Reads
BWA Aligner for Single-End Illumina Reads
BWA aln 0.7.4
BWA index 0.7.4
BWA mem 0.7.15
BWA-0.7.4 non-model species
BWA_mem_longreads-0.7.15
bzip2 and bunzip2
CACE
Calling SNPs INDELs with SAMtools BCFtools
Canberra Distance
Canu 1.8
CD-HIT-est 4.6.8
CEGMA
CharaParser Learn
CharaParser Markup
Check covariance matrix file (CheckCvm)
Check standard GWAS files (CheckGwas)
Chromatra L
Chromatra T
Clean_fasta_header
ClustalW2
clusterProfiler
clusterReport
CNVnator-0.3.3
combine GAFs
Compress a directory with GNU tar-1.27.1
Compress files with gzip 1.6-2
Compress selected files with GNU tar
Compute Contig Statistics
Concatenate 2 Files-workflow edition.
Concatenate Multiple Files
construction genetic map
Convert bwt to arf
Convert SAM-to-sorted-BAM
ConvertTraitID 0.0.1
Copy with Scaffolding XML of DESeq2 (multifactorial pairwise comparisons)
Create BLAST database
Create BLAST database-2.6.0+
create dir
Create_BLAST_database-2.6.0__with_parse_seqids_option
Cuffcompare-2.2.1
Cuffdiff
Cuffdiff2
Cuffdiff2 with JS option
Cuffdiff2-16-way-max
CuffDiff 2.2.1a
Cufflinks
Cufflinks 2.2.1
Cufflinks_from_SAM-2.2.1 in DE
Cuffmerge2
Cuffmerge 2.2.1
curl-7.45.0
Cut Columns
cutadapt
DataHog
de novo population genomics analysis
De-interlace paired fasta

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Check standard GWAS files (CheckGwas)

Updated Jul 31, 2012

Check standard GWAS files (CheckGwas)

Jul 31, 2012

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