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GainsboroOrangeVISIBLE ONLY TO STAFF - CONTENT HIDDEN FOR DEPRECATED APP

BEDTools annotateBed

Community rating: ?????

Annotates the depth & breadth of coverage of features from multiple files on the intervals in bed/gff/vcf file

Quick Start

To use BEDTools annotateBed, import your data in BED format.
Resources: http://code.google.com/p/bedtools/

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Bedtools.

Input File(s)

Use a.bed and b.bed from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

Default parameters only, no further configuration needed.

Output File(s)

Expect bedtools_annotate_output as output.

Tool Source for App

http://code.google.com/p/bedtools/

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BEDTools annotateBed (archived)