Community rating: ?????
Converts BAM alignments to BED6 or BEDPE format
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Bedtools.
Use test_reads.sorted.bam from the directory above as test input.
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Expect bedtools_bamtobed_output as output.