BEDTools 2.26.0 bamToBed

BEDTools 2.26.0 bamToBed

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Converts BAM alignments to BED6 or BEDPE format

Quick Start

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Bedtools.

Input File(s)

Use test_reads.sorted.bam from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect bedtools_bamtobed_output as output.

Tool Source for App