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Create sequence logo with input fasta file.

Quick Start

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> sequencelogo -> input.

Input File(s)

Use globin.fasta from the directory above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

Expect an image file as output. For the test case, the output file you will find under Community Data -> iplantcollaborative -> example_data -> sequencelogo -> output is named test.png.

Tool Source for App