BWA 0.7.4 Divergent species
- de-confluence
- lgardine
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BWA 0.7.4 Divergent species
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Index and map short reads to a reference sequence with BWA (Default settings optimised for mapping 50bp reads to a divergent species)
Quick Start
- To use BWA 0.7.4 Divergent species, import your data in FASTQÂ format.
- Resources: http://bio-bwa.sourceforge.net
Test Data
Test data for this app appears directly at the following link http://de.iplantcollaborative.org/dl/d/34CEDFB9-EE4C-46B4-8CBE-F82ABE5DCEE4/Parent_RIL25_subset.fastq
Input File(s)
Use the fastq file above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed
- Â
Output File(s)
Expect a SAM file as output. For the test case, the output file you will find as an example is as follows:Â http://de.iplantcollaborative.org/dl/d/6BCD987E-99DE-4705-AEEC-927EE10CA9A3/bwa_output.sam