BWA 0.7.4 Divergent species
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Index and map short reads to a reference sequence with BWA (Default settings optimised for mapping 50bp reads to a divergent species)
Use the fastq file above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed
Expect a SAM file as output. For the test case, the output file you will find as an example is as follows: http://de.iplantcollaborative.org/dl/d/6BCD987E-99DE-4705-AEEC-927EE10CA9A3/bwa_output.sam