BWA 0.7.4 Divergent species

BWA 0.7.4 Divergent species

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Index and map short reads to a reference sequence with BWA (Default settings optimised for mapping 50bp reads to a divergent species)

Quick Start

Test Data

Input File(s)

Use the fastq file above as test input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed

Output File(s)

Expect a SAM file as output. For the test case, the output file you will find as an example is as follows:

Tool Source for App