Discovery Environment Applications List

All content
Space settings

Results will update as you type.

•
Poretools nucdist 0.6.1a1
•
Poretools qualdist 0.6.1a1
•
Poretools readstats 0.6.1a1
•
Poretools stats 0.6.1a1
•
Poretools times 0.6.1a1
•
Poretools winner 0.6.1a1
•
Principal Component Analysis
•
Prinseq-Graph-noPCA evaluate reads
•
Prinseq-lite
•
Prodigal
•
ProgressiveMauve
•
PROML
•
PROTNJ
•
PROTPARS
•
QIIME-1.9.1 in Discovery Environment
QTL Cartographer
•
QTL simulation workflow
•
QUAST (3.2 and 4.0) in the Discovery Environment
•
queryOrthoMCL 1.0
•
Rascaf V1.0.2 in Discovery Environment
•
RAxML on CyVerse UK
•
RAxML-7.3.0
•
RAxML-8.2.3_small_and_medium
•
raxml-RFdistance-8.2.11
•
Ray-2.3.1
•
Rename contigs 2.0
•
rePair-Fix Read Pairing
RMTA v2.6.3
•
rnaQUAST 1.2.0 (reference based) using DE
•
rnaQUAST_1.2.0 (de novo based)
•
RSEM 1.2.12
•
RSEM-Prepare-Reference 1.2.19
•
RseqFilt-1.0
•
Sabre-barcode-demultiplexing
•
Sailfish_align_quant-0.9.2
•
salmon-index-quant-0.8.1
•
SAM to sorted BAMv2
•
SAM_to_Sorted_BAM-0.1.9
•
Samtools 1.7 BAM to SAM
•
Samtools 1.7 bamtofastq
•
Samtools 1.7 flagstat
•
Samtools 1.7 Index BAM file
•
SAMTools 1.7 mpileup
•
Samtools 1.7 rmdup + flagstat
•
Samtools 1.7 rmdup remove PCR duplicates
•
Samtools 1.7 SAM to BAM format conversion
•
SAMTools 1.7 SAM to sorted BAM
•
Samtools 1.7 Sort Bam file
•
Samtools 1.7 view - Filter mapped or unmapped reads
•
SAMTools 1.7 view Filter by region
•
Samtools faidx (fasta indexer)
•
SAMtools index BAM file
•
SAMtools view-BEDtools bamtoFastq
•
SAMTOOLS-0.1.19 mpileup raw-vcf-out
•
SAMTOOLS-0.1.19 mpileup variant pipeline
•
BCFTOOLS-1.13 VCF-Utilities varFilter
•
Samtools_mapping_stats-1.0
•
Scrappie
•
Scythe-0.991 using DE
•
Select contigs
•
seqtk_seq-1.0.76
•
SequenceLogo
•
Seurat VICE app in DE
•
Sff2Fastq
•
SGA 0.10.15 Pre-Process Reads
•
Sickle-quality-based-trimming version 1.0
•
SKAT
•
Sleuth
•
Snap, gene prediction
•
Snap-gene prediction-112913
•
SnapATAC VICE app in DE
•
SNP calling illumina seq data Part 2
•
snp_ase
•
Soapdenovo
•
Soapdenovo 2.04
•
Soapdenovo-Trans 1.0
•
Soapdenovo-trans-small-1.0.4
•
Sort a File On A Column
•
Sort File On 2 columns
•
SPAdes-3.8.0
•
Spladder-1.0.0
•
Split FASTA file
•
SRA-Import-0.1.0
•
Sspace
•
Stampy-build-and-map
•
Star-index-align_2.5.3.a
•
STAR_2.4.0.1
•
STAR_2.4.0.1_GenerateGenomeIndex
•
StringTie1.3.3
•
StringTie-1.3.3_merge
•
Structure2Tassel
•
Suffixerator
•
Synapse_client-1.6.1
•
Syntenic_Feature_Detector
•
taco-0.7.0
•
Tassel3 Conversion
•
Tassel4 Conversion
•
tbl2asn (gapped)-22.9 using DE
•
tbl2asn (gapped)-25.8 using DE
•
tbl2asn (ungapped)-22.9 using DE
•
tbl2asn (ungapped)-25.8 using DE
•
TIES baseline 1 - averaging
•
TIES baseline 2 - line fitting
•
TIES basic complete run (rev A)
•
TIES step 1 - parse input CSV data
•
TIES step 2 - training full LSS model
•
tophat2gff3
•
Transcript decoder 1.0
•
Transcript decoder 2.0
•
TransDecoder 5.5.0
•
TransDecoder 5.5.0 detect coding regions
•
TransDecoder 5.5.0 extract long ORFs
•
TreeView
•
trim_galore-0.4.1 using DE
•
Trimmomatic-programmable-0.33
•
Trimmomatic-programmable-0.36
•
Trimmomatic-programmable-0.38
•
Trinity normalize by k-mer coverage r11.10.13
•
Trinity r2013-08-14a
•
Trinity r2013-11-10
•
Trinity-64GB-2.1.1
Tuxedo suite PE up to 4 conditions
•
Uncompress files with gunzip 1.6-2
•
Uncompress with gunzip
•
Uncompress with tar
•
UNEAK
•
unique filter
•
unpigz-2.3.4 (Uncompress multiple files with ungzip parallely)
•
Validate
•
Variable Region Identifier and Remover
•
Variant annotation using SnpEff in DE
•
VarScan-2.3.6 SNP caller
•
VCF to GFF3
•
vcfutils.pl varFilter
•
vContact_0.1.49 and vContact-PCs
•
Velvetg-1.2.07
•
Velvetg-1.2.10
•
Velvetg-1.2.075
•
Velvetg-1.2.075-assembly-step2
•
Velveth-1.2.07
•
Velveth-1.2.10
•
VIBRANT-1.2.0
•
Viral Contaimination Detection 1.0
•
VirSorter 1.0.1
•
VIRSorter 1.0.2
•
Weka 3.7.11
•
Word Count
•
wtdbg 2.3
•
wtpoa-cns 2.3
•
XYPlot 0.0.2
•
tabix 0.2.6
•
bgzip
•
gffread-2.2.1 convert between GFF3 and GTF2
•
vcftools-stats 0.1.16
•
vcftools-merge 0.1.16
•
vcftools-concat 0.1.16
•
vcftools-compare 0.1.16
•
vcftools-phased-join 0.1.16
•
TPM calculator 0.0.3
•
BCFtools 1.8 query
•
miR-PREFeR

Discovery Environment Applications List

/

List of Applications

/

Spladder-1.0.0

Owned by upendra kumar Devisetty

Last updated: Mar 26, 2018

2 min read

Loading data...