(SAMTOOLS-0.1.19) Index BAM file 

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Samtools application to index a BAM file.

Quick Start

• To use (SAMTOOLS-0.1.19) Index BAM file, import your data in BAM format.
• Resources: https://github.com/samtools/samtools

Test Data

Input File(s)

Use sorted.bam from the directory above as test input.

Parameters Used in App

No parameters to set.

Output File(s)

Expect a file named after the bam file (e.g. *.bam, *.bam.bai) For the test case, the output file you will find in the example_data directory is named sorted.bam.bai

Tool Source for App

• https://github.com/samtools/samtools