RSEM-Prepare-Reference 1.2.19
RSEM-Prepare-Reference-1.2.19
Description and Quick StartPrepares transcripts from genome files and matching GTF files.
Test Data:Community Data > iplantcollaborative > example_data > RSEM_prepare_reference > inputInput Files -- 2 files needed. A genome sequence file, and a matching .gtf annotation or assembly file. The test files are genome.fas and annotation.gtf
Parameters Used in App: No special parameters or options.
Output Files: A series of files is created. The main one of interest is the transcript sequence file. Others list the chromosomes or scaffolds in an assembly, and other intermediate files.
Test output files: Community Data > iplantcollaborative > example_data > output > RSEM_prepare_reference> Arabidopsis.transcripts.fa