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MImapqtl

MImapqtl

Jun 03, 2015

Mimapqtl

MImapqtl is a QTL mapping analysis for multiple QTL in multiple intervals for a single trait in a single environment.

Quick Start

  • To use MImapqtl, upload your data in the same format as the output Rcross. MImapqtl also requires a genetic linkage map in the same format of Rmap outputs.
  • Resources: documentation

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:

Community Data > iplantcollaborative > example_data > mlmapqtl

Input File(s)

  • Use qtlcart.cro file as input.
  • Use qtlcart.map file as input.
  • Use qtlcart.eqt file as input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

  • Expect qtlcart.mim, qtlcart.log, qtlcarto.mqt, and qtlcart.rc as output.

Tool Source for App